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2014-01-18Fix compiler warningsorbitz
2014-01-17add test.farefactor-total-countCalvin Morrison
2014-01-17add in pointer fixCalvin Morrison
2014-01-17fix pointerCalvin Morrison
2014-01-16update translate functionCalvin Morrison
2014-01-16add a fread_save_n_bytes functionCalvin Morrison
2014-01-15fix spacingCalvin Morrison
2014-01-15start using fread, still not workingCalvin Morrison
2014-01-15add handling for overrunning the string length, and if there's a skip char in...Calvin Morrison
2014-01-15add a fix for skip charCalvin Morrison
2014-01-15fix counting to not be reversed, remove is_whitespace is_error_char and inste...Calvin Morrison
2013-12-31Remove need for strnstriporbitz
2013-12-31Use optimizationsorbitz
2013-12-31Make functions static, move inner loop out to a functionorbitz
2013-12-31Refactor out translation and error checkingorbitz
2013-12-31Iterate in other directionorbitz
2013-12-31Remove fclose of file handleorbitz
2013-12-29Cleanup Makefile, add debugging output (for now)orbitz
2013-12-29Remove this shared thing...orbitz
2013-12-29Flip impossible orderingorbitz
2013-12-29Clneaup some whitespace, change how calloc calledorbitz
2013-12-29Namespace all the functions and make private ones staticorbitz
2013-12-29Clean up signed comparison warningsorbitz
2013-12-29Cleanup useless const decoratorsorbitz
2013-12-29Remove useless inline decoratororbitz
2013-12-29Align and label lookup maporbitz
2013-12-29Clean up indentation and whitespaceorbitz
2013-12-29Refactor to pull opening the file out of the count functionorbitz
2013-12-29Cleanup indentation and whitespaceorbitz
2013-11-24performance boost from skipping our first newline. It seems crazy, but this c...Calvin Morrison
2013-11-23fix labels, fix spelling of positionCalvin Morrison
2013-11-23better allocation of memory, make sure to free other memoryCalvin Morrison
2013-11-15Merge branch 'master' of github.com:mutantturkey/dna-utilsCalvin Morrison
2013-11-15instead of bitshift, use a equality operatorCalvin Morrison
2013-11-11fix memleakCalvin Morrison
2013-11-11fix warningsCalvin Morrison
2013-11-11fix printfCalvin Morrison
2013-11-11added label and nonzero optionsCalvin Morrison
2013-11-11index to kmerfunctionCalvin Morrison
2013-11-07update makefileCalvin Morrison
2013-11-07rename to counts per sequence, don't provide frequencies only countsCalvin Morrison
2013-11-07rename to counts per sequence, don't provide frequencies only countsCalvin Morrison
2013-11-06fix freeCalvin Morrison
2013-10-31fix memset againCalvin Morrison
2013-10-31Revert "fix memset"Calvin Morrison
2013-10-31fix memsetCalvin Morrison
2013-10-23output individual kmers if requestedCalvin Morrison
2013-10-17update makefile with dependencies and proper static linkingCalvin Morrison
2013-10-17add a static library to our makefileCalvin Morrison
2013-10-17update kmer utilsCalvin Morrison
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