diff options
Diffstat (limited to 'kmer_utils.h')
| -rw-r--r-- | kmer_utils.h | 11 |
1 files changed, 5 insertions, 6 deletions
diff --git a/kmer_utils.h b/kmer_utils.h index 762c20c..9f4d34f 100644 --- a/kmer_utils.h +++ b/kmer_utils.h @@ -1,12 +1,11 @@ // Kmer functions -void convert_kmer_to_num(char *str, const unsigned long length); -unsigned long num_to_index(const char *str, const int kmer, const long error_pos); +void convert_kmer_to_num(char *str, unsigned long length); +unsigned long num_to_index(const char *str, const int kmer, long error_pos); char *index_to_kmer(unsigned long long index, long kmer); -unsigned long long * get_kmer_counts_from_file(const char *fn, const int kmer); +unsigned long long * get_kmer_counts_from_file(FILE *fh, int kmer); // Utility functions char *strnstrip(const char *s, char *dest, int c, int len); -inline unsigned long long pow_four(unsigned long long x); +unsigned long long pow_four(unsigned long long x); -// Variables -const unsigned char alpha[256]; +extern const unsigned char alpha[256]; |