diff options
| -rw-r--r-- | kmer_utils.c | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/kmer_utils.c b/kmer_utils.c index ef46842..dc79700 100644 --- a/kmer_utils.c +++ b/kmer_utils.c @@ -82,7 +82,7 @@ char *index_to_kmer(unsigned long long index, long kmer) { // reverse the array, as j increases, decrease i for(j = 0; j < start; j++, i--) - ret[j + offset] = reverse_alpha[num_array[i]]; + ret[j + offset] = reverse_alpha[(int)num_array[i]]; // set our last character to the null termination byte ret[kmer + 1] = '\0'; @@ -151,6 +151,9 @@ unsigned long long * get_kmer_counts_from_file(const char *fn, const unsigned in if(start == NULL) continue; + // point to one past that. + start = start + 1; + size_t start_len = strlen(start); @@ -163,6 +166,7 @@ unsigned long long * get_kmer_counts_from_file(const char *fn, const unsigned in } } + // strip out all other newlines to handle multiline sequences str = strnstrip(start, str, '\n',start_len); size_t seq_length = strlen(str); |