diff options
| -rw-r--r-- | kmer_utils.h | 7 |
1 files changed, 4 insertions, 3 deletions
diff --git a/kmer_utils.h b/kmer_utils.h index cfe664b..3caa8de 100644 --- a/kmer_utils.h +++ b/kmer_utils.h @@ -1,8 +1,7 @@ // Kmer functions void convert_kmer_to_num(char *str, const unsigned long length); -unsigned long num_to_index(const char *str, const int kmer, const long error_pos, size_t *current_position); +unsigned long num_to_index(const char *str, const int kmer, const long error_pos, long long *current_position); char *index_to_kmer(unsigned long long index, long kmer); -unsigned long long * get_kmer_counts_from_file(const char *fn, const int kmer); // Utility functions char *strnstrip(const char *s, char *dest, int c, int len); @@ -11,4 +10,6 @@ unsigned long long pow_four(unsigned long long x); // Variables const unsigned char alpha[256]; -unsigned long long load_specific_mers_from_file(char *fn, unsigned int kmer, size_t width, size_t *arr); +// file loading functions +unsigned long long load_specific_mers_from_file(const char *fn, unsigned int kmer, size_t width, size_t *arr); +unsigned long long * get_kmer_counts_from_file(FILE *fh, const int kmer); |