diff options
| -rw-r--r-- | kmer_utils.c | 20 |
1 files changed, 6 insertions, 14 deletions
diff --git a/kmer_utils.c b/kmer_utils.c index b96f831..44b5eb0 100644 --- a/kmer_utils.c +++ b/kmer_utils.c @@ -218,7 +218,6 @@ kmer_map *get_sparse_kmer_counts_from_file(FILE *fh, int kmer) { // for each char in the k-mer check if it is an error char for(i = position + kmer - 1; i >= position; i--){ if(seq[i] == 5) { - mer = width; position = i; goto next; } @@ -228,12 +227,9 @@ kmer_map *get_sparse_kmer_counts_from_file(FILE *fh, int kmer) { mer += seq[i] * multiply; multiply = multiply << 2; } - // use this point to get mer of our loop - next: - { - // bump up the mer value in the counts array - (*counts)[mer]++; - } + // bump up the mer value in the counts array + (*counts)[mer]++; + next: ; } } @@ -291,7 +287,6 @@ unsigned long long * get_dense_kmer_counts_from_file(FILE *fh, const unsigned in // for each char in the k-mer check if it is an error char for(i = position + kmer - 1; i >= position; i--){ if(seq[i] == 5) { - mer = width; position = i; goto next; } @@ -301,12 +296,9 @@ unsigned long long * get_dense_kmer_counts_from_file(FILE *fh, const unsigned in mer += seq[i] * multiply; multiply = multiply << 2; } - // use this point to get mer of our loop - next: - { - // bump up the mer value in the counts array - counts[mer]++; - } + // bump up the mer value in the counts array + counts[mer]++; + next: ; } } |