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| -rw-r--r-- | README.md | 19 |
1 files changed, 11 insertions, 8 deletions
@@ -1,16 +1,19 @@ -dna-utils -========= +# dna-utils -general utilities for manipulating sequences and fasta files - high performance kmer counting +This repository contains general utilities for processing sequences in fasta files. -Tools included -============== -kmer_total_count - this program will count each kmer, and print to standard out. +### Tools included ### -arguemnts: fasta_file kmer_size -example: kmer_total_count SuperManSequences.fasta 8 +kmer_total_count - this program will count each kmer in a fasta file, and print to standard out. + +#### Usage + + kmer_total_count filename kmer_size + + # Example + calvin@barnabas:~/dna-utils$ ./kmer_total_count SuperManSequences.fasta 8 the order of the array corresponds to AAAA, AAAC, AAAG, AAAT and so on |