diff options
| -rw-r--r-- | kmer_total_count.c | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/kmer_total_count.c b/kmer_total_count.c index 8cc91a7..3a418ed 100644 --- a/kmer_total_count.c +++ b/kmer_total_count.c @@ -13,7 +13,7 @@ int main(int argc, char **argv) { char *line = NULL; size_t len = 0; ssize_t read; - unsigned long i = 0; + long i = 0; unsigned long long *counts; @@ -40,16 +40,16 @@ int main(int argc, char **argv) { exit(EXIT_FAILURE); while ((read = getline(&line, &len, fh)) != -1) { - if(line[0] != '>') { + if(line[0] != '>' && read > kmer) { convert_kmer_to_num(line, read); - for(i = 0; i < read - kmer; i++) { + for(i = 0; i < (read - kmer); i++) { counts[num_to_index(&line[i],kmer, width)]++; } } } - for(i = 0; i < width; i++) + for(i = 0; i < (unsigned)width; i++) printf("%llu\n", counts[i]); |