diff options
| -rw-r--r-- | kmer_utils.h | 9 |
1 files changed, 9 insertions, 0 deletions
diff --git a/kmer_utils.h b/kmer_utils.h index f1a84b6..11506b3 100644 --- a/kmer_utils.h +++ b/kmer_utils.h @@ -1,2 +1,11 @@ +// kmer functions void convert_kmer_to_num(char *str, const unsigned long length); unsigned long num_to_index(const char *str, const int kmer, const long error_pos); +unsigned long long * get_kmer_counts_from_file(const char *fn, const int kmer); + +// Utility functions +char *strnstrip(const char *s, char *dest, int c, int len); +inline unsigned long long pow_four(unsigned long long x); + +// Variables +const unsigned char alpha[256]; |