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diff --git a/README.md b/README.md new file mode 100644 index 0000000..c217e1c --- /dev/null +++ b/README.md @@ -0,0 +1,19 @@ +# dna-utils + + +This repository contains general utilities for processing sequences in fasta files. + + +### Tools included ### + + +kmer_total_count - this program will count each kmer in a fasta file, and print to standard out. + +#### Usage + + kmer_total_count filename kmer_size + + # Example + calvin@barnabas:~/dna-utils$ ./kmer_total_count SuperManSequences.fasta 8 + +the order of the array corresponds to AAAA, AAAC, AAAG, AAAT and so on |