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author | Calvin Morrison <mutantturkey@gmail.com> | 2014-02-26 13:38:43 -0500 |
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committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-02-26 13:38:43 -0500 |
commit | c038740be3e0dec1798c0c660081f1b6d2445907 (patch) | |
tree | 42b84413c1ad0dcecadcb721176746ca788fd338 /kmer_utils.h | |
parent | 719c45d9ea49f33f087db899737ad5af4fc4414f (diff) |
update sparse
Diffstat (limited to 'kmer_utils.h')
-rw-r--r-- | kmer_utils.h | 10 |
1 files changed, 7 insertions, 3 deletions
diff --git a/kmer_utils.h b/kmer_utils.h index bf60dc4..af13227 100644 --- a/kmer_utils.h +++ b/kmer_utils.h @@ -11,6 +11,10 @@ unsigned long long pow_four(unsigned long long x); const unsigned char alpha[256]; // file loading functions -unsigned long long load_specific_mers_from_file(const char *fn, unsigned int kmer, size_t width, size_t *arr); -node * get_kmer_counts_from_filename(const char *fn, const unsigned int kmer); -node * get_kmer_counts_from_file(FILE *fh, const int kmer); +node * get_sparse_kmer_counts_from_filename(const char *fn, const unsigned int kmer); +node * get_sparse_kmer_counts_from_file(FILE *fh, const int kmer); + +unsigned long long * get_dense_kmer_counts_from_file(FILE *fh, const unsigned int kmer); + + +void print_dense(unsigned long long *counts, bool label, bool nonzero, unsigned int kmer); |