kmer_count_per_sequence: add option to load specific mers from file, add multiline ecounting

1 files changed, 4 insertions, 2 deletions

diff --git a/kmer_utils.h b/kmer_utils.h
index 762c20c..cfe664b 100644
--- a/kmer_utils.h
+++ b/kmer_utils.h
@@ -1,12 +1,14 @@
 // Kmer functions
 void convert_kmer_to_num(char *str, const unsigned long length);
-unsigned long num_to_index(const char *str, const int kmer, const long error_pos);
+unsigned long num_to_index(const char *str, const int kmer, const long error_pos, size_t *current_position);
 char *index_to_kmer(unsigned long long index, long kmer);
 unsigned long long * get_kmer_counts_from_file(const char *fn, const int kmer);
 
 // Utility functions
 char *strnstrip(const char *s, char *dest, int c, int len);
-inline unsigned long long pow_four(unsigned long long x);
+unsigned long long pow_four(unsigned long long x);
 
 // Variables
 const unsigned char alpha[256]; 
+
+unsigned long long load_specific_mers_from_file(char *fn, unsigned int kmer, size_t width, size_t *arr);