diff options
| author | Calvin Morrison <mutantturkey@gmail.com> | 2013-10-04 18:25:21 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2013-10-04 18:25:21 -0400 |
| commit | 2a831c405c8372f86c22c5cf3684f63209877b49 (patch) | |
| tree | c6389ac7755a85d44cafe22d4266b0edad7bedb4 /kmer_utils.c | |
| parent | 90106ba794458787db91b8c85f5f8740831f14bd (diff) | |
no more branching
Diffstat (limited to 'kmer_utils.c')
| -rw-r--r-- | kmer_utils.c | 7 |
1 files changed, 2 insertions, 5 deletions
diff --git a/kmer_utils.c b/kmer_utils.c index f4f8d2f..a1ff9b2 100644 --- a/kmer_utils.c +++ b/kmer_utils.c @@ -2,7 +2,7 @@ // convert a string of k-mer size base-4 values into a // base-10 index -unsigned long num_to_index(const char *str, const int kmer, const long error_pos) { +inline unsigned long num_to_index(const char *str, const int kmer, const long error_pos) { int i = 0; unsigned long out = 0; @@ -17,7 +17,6 @@ unsigned long num_to_index(const char *str, const int kmer, const long error_pos return error_pos; } - out += str[i] * multiply; multiply = multiply << 2; } @@ -25,9 +24,6 @@ unsigned long num_to_index(const char *str, const int kmer, const long error_pos return out; } -// replaces values in a char array of ACGT's and others with -// values that correspond to their base 4 value to be used in -// num_to_index. void convert_kmer_to_num(char *str, const unsigned long length) { unsigned long i = 0; @@ -56,3 +52,4 @@ void convert_kmer_to_num(char *str, const unsigned long length) { } } + |