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authorCalvin Morrison <mutantturkey@gmail.com>2014-03-06 17:05:40 -0500
committerCalvin Morrison <mutantturkey@gmail.com>2014-03-06 17:05:40 -0500
commit2c038ba630c14c7030186c64e9eb92761ddcba74 (patch)
treef4705db1e2603bdc831254eee60800eb10448fcf /kmer_counts_per_sequence.c
parent5d7e67a846ec104da2d7bdb988672fbd02ddda28 (diff)
add kmer_continuous_count
this tool will count continuously, instead of line by line. The way that this works out is something like this: test.fa > header 1 AAAAATTTTT > header 2 GGGGGAAAAA counting 6 mers, the program will count TTTGGG, TTGGGG, TGGGGG, like there was no header seperating them. This can be useful for certain tyeps of processing, like when the sequences are continuous from a genome. initial commit
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