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author | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-06 17:05:40 -0500 |
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committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-06 17:05:40 -0500 |
commit | 2c038ba630c14c7030186c64e9eb92761ddcba74 (patch) | |
tree | f4705db1e2603bdc831254eee60800eb10448fcf /kmer_counts_per_sequence.c | |
parent | 5d7e67a846ec104da2d7bdb988672fbd02ddda28 (diff) |
add kmer_continuous_count
this tool will count continuously, instead of line by line. The way that
this works out is something like this:
test.fa
> header 1
AAAAATTTTT
> header 2
GGGGGAAAAA
counting 6 mers, the program will count TTTGGG, TTGGGG, TGGGGG, like
there was no header seperating them. This can be useful for certain
tyeps of processing, like when the sequences are continuous from a
genome.
initial commit
Diffstat (limited to 'kmer_counts_per_sequence.c')
0 files changed, 0 insertions, 0 deletions