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| author | Calvin Morrison <mutantturkey@gmail.com> | 2013-10-03 10:19:07 -0400 |
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| committer | Calvin Morrison <mutantturkey@gmail.com> | 2013-10-03 10:19:07 -0400 |
| commit | 91ee7c38e7cfe000de8532ba777e8a8e3e6ba4f5 (patch) | |
| tree | 6ff8c5a6e430c94d73c630ab78b3c7881899443a | |
| parent | e72199fcaec7ed75d1a882778919dba74b788cb0 (diff) | |
Update README.md
| -rw-r--r-- | README.md | 19 |
1 files changed, 11 insertions, 8 deletions
@@ -1,16 +1,19 @@ -dna-utils -========= +# dna-utils -general utilities for manipulating sequences and fasta files - high performance kmer counting +This repository contains general utilities for processing sequences in fasta files. -Tools included -============== -kmer_total_count - this program will count each kmer, and print to standard out. +### Tools included ### -arguemnts: fasta_file kmer_size -example: kmer_total_count SuperManSequences.fasta 8 +kmer_total_count - this program will count each kmer in a fasta file, and print to standard out. + +#### Usage + + kmer_total_count filename kmer_size + + # Example + calvin@barnabas:~/dna-utils$ ./kmer_total_count SuperManSequences.fasta 8 the order of the array corresponds to AAAA, AAAC, AAAG, AAAT and so on |