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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-02-01 18:15:43 -0500 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-02-01 18:15:43 -0500 |
| commit | 85665992c7a009a60aff64cd8af1c220ee1f0d47 (patch) | |
| tree | 1809ac65c77e817fbc65bb9bd0b466a833c2fc9f | |
| parent | cd6e40b6ca7fcda90bfa44127261e833984a931a (diff) | |
get rid of position, add help
| -rw-r--r-- | kmer_counts_per_sequence.c | 23 |
1 files changed, 22 insertions, 1 deletions
diff --git a/kmer_counts_per_sequence.c b/kmer_counts_per_sequence.c index ac7ff44..d871ae5 100644 --- a/kmer_counts_per_sequence.c +++ b/kmer_counts_per_sequence.c @@ -7,7 +7,28 @@ #include "kmer_utils.h" -unsigned long position = 0; +void help() { + printf("usage: kmer_counts_per_sequence input_file kmer [kmer-file] ...\n\n" + "count mers in each sequence of size k from a fasta file\n" + "\n" + " --input -i input fasta file to count\n" + " --kmer -k size of mers to count\n" + " --mer-file -m a file containing a list of mers you are interested\n" + " in opening. this will enable output your results in\n" + " a sparse format \n" + " --sparse -s output values in a sparse format. output is in the\n" + " order sequence_number, mer_index, value\n" + "\n" + "Report all bugs to mutantturkey@gmail.com\n" + "\n" + "Copyright 2014 Calvin Morrison, Drexel University.\n" + "\n" + "If you are using any dna-utils tool for a publication\n" + "please cite your usage:\n\n" + "dna-utils. Drexel University, Philadelphia USA, 2014;\n" + "software available at www.github.com/EESI/dna-utils/\n"); +} + int main(int argc, char **argv) { // getdelim variables |