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| -rw-r--r-- | README.md | 22 |
1 files changed, 21 insertions, 1 deletions
@@ -60,7 +60,7 @@ valid steps are these: This function does not try to be smart, so use it wisely -### Manually scoring mer combinations +### Manually scoring specific mer combinations from file Users can manually score combinations of mers they choose using the score\_mers.py script. @@ -76,6 +76,26 @@ The combination file should look like this: each row is combination to be scored. + +### Manually score all combinations from file +Users can manually score all combinations of mers they choose using the +score\_mers.py script. + + score_mers.py -f foreground.fa -b background.fa -m mer file -o output + + +The mer file should look like this: + + ATATAT + TACATA + TACATAGCA + TATAGAATAC + CGTAGATA + TAGAAT + +each row is a seperate mer. do not put multiple mers on one line. + + ## Customizable variables range of mers, min and max |