From 17a506ed4e3f3c0ee89257549d2b4f0ea82cb899 Mon Sep 17 00:00:00 2001
From: Calvin Morrison <mutantturkey@gmail.com>
Date: Fri, 30 Aug 2013 14:15:26 -0400
Subject: proper check, and use fgest instead of getc

---
 count_nucleobases.c | 45 +++++++++++++++++++++++++--------------------
 1 file changed, 25 insertions(+), 20 deletions(-)

diff --git a/count_nucleobases.c b/count_nucleobases.c
index 2f3dce8..0396ea6 100755
--- a/count_nucleobases.c
+++ b/count_nucleobases.c
@@ -16,29 +16,34 @@ int main(int argc, char **argv) {
   }
   FILE *fh = fopen(argv[1], "r" );
   if(fh == NULL) {
-    fprintf(stderr, "could not open dna.txt\n");
+    fprintf(stderr, "Couldn't open: %s\n", argv[1]);
     exit(EXIT_FAILURE);
   }
 
-  int ch = 0;
-  while ((ch = getc(fh)) != EOF) {
-    switch(ch) {
-      case 'A':
-      case 'a':
-        a++;
-        break;
-      case 'C':
-      case 'c':
-        c++;
-        break;
-      case 'G':
-      case 'g':
-        g++;
-        break;
-      case 'T':
-      case 't':
-        t++;
-        break;
+  char line[8192];
+  while (fgets(line, 8192, fh) != NULL) {
+
+    int i = 0;
+
+    for(i = 0; i < strlen(line); i++) {
+      switch(line[i]) {
+        case 'A':
+        case 'a':
+          a++;
+          break;
+        case 'C':
+        case 'c':
+          c++;
+          break;
+        case 'G':
+        case 'g':
+          g++;
+          break;
+        case 'T':
+        case 't':
+          t++;
+          break;
+      } 
     }
   }
 
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