# How Can I Install The Quikr Utility? # To use Quikr there are several prerequisites. ## Requirements ## + Mac OS X 10.6.8 or GNU/Linux + 4Gb of RAM minimum. Absolutely neccessary. + gcc that supports OpenMP ### Python Requirements ### + Python 2.7 + Scipy + Numpy + BioPython ### Mac Requirements ### + Mac OS X 10.6.8 (what we have tested) + GCC 4.7 or newer. (gcc 4.2 did not work, and is the default installation) + OCaml compiler mlton + OpenMP libraries (libgomp, usually comes with gcc) ### Linux Requirements ### + GCC 4.7 or newer + OCaml compiler mlton + OpenMP libraries (libgomp, usually comes with gcc) We also have a Quikr implementation in Matlab so that you can easily integrate Quikr into your custom programs and scripts. ## Installation ## Our Quikr code is available on our sourceforge download page: [http://sourceforge.net/projects/quikr/](sourceforge project page) Our development GIT repository is available here: [http://rosalind.ece.drexel.edu/git/quikr/](rosalind.ece.drexel.edu/git/quikr/) To install quikr, download our project and in the folder run: make sudo make install This will install the quikr, quikr\_train and multifasta\_to\_otu utilities. To install the python scripts and module systemwide, run make python sudo make install_python