From 708ffeb6839f754e2834431f918cf2ee01e8eee6 Mon Sep 17 00:00:00 2001
From: Calvin <calvin@EESI>
Date: Tue, 14 May 2013 20:09:32 -0400
Subject: fixed kmer argument bug

---
 src/python/quikr_train | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'src/python')

diff --git a/src/python/quikr_train b/src/python/quikr_train
index 3096d14..5a8ec69 100755
--- a/src/python/quikr_train
+++ b/src/python/quikr_train
@@ -32,14 +32,14 @@ def main():
   if not os.path.isfile(args.input):
     parser.error( "Input database not found")
 
-  # call the quikr train function, save the output with np.save
-  matrix = quikr.train_matrix(args.input, args.kmer)
-
   if args.kmer is None: 
     kmer = 6
   else:
     kmer = args.kmer
 
+  # call the quikr train function, save the output with np.save
+  matrix = quikr.train_matrix(args.input, kmer)
+
   if args.compress: 
     output_file = gzip.open(args.output, "wb")
   else:
-- 
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