From 852ee6695ed68f7a62a33f8c6fc340f1d2e2a35b Mon Sep 17 00:00:00 2001
From: Calvin <calvin@EESI>
Date: Fri, 15 Mar 2013 13:57:24 -0400
Subject: updated multifasta_to_otu to is_compressed

---
 src/python/multifasta_to_otu | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'src/python/multifasta_to_otu')

diff --git a/src/python/multifasta_to_otu b/src/python/multifasta_to_otu
index dc82213..a2c9e1e 100755
--- a/src/python/multifasta_to_otu
+++ b/src/python/multifasta_to_otu
@@ -41,7 +41,7 @@ def main():
   args = parser.parse_args()
     
   # our defaults
-  jobs=multiprocessing.cpu_count()
+  jobs = multiprocessing.cpu_count()
   trained_matrix = args.trained_matrix
   input_directory = args.input_directory
   output_directory = args.output_directory
@@ -71,7 +71,7 @@ def main():
     kmer = args.kmer
 
   # Load trained matrix
-  if q.isCompressed(args.trained_matrix):
+  if q.is_compressed(args.trained_matrix):
     trained_matrix_file = gzip.open(args.trained_matrix, "rb")
   else:
     trained_matrix_file = open(args.trained_matrix, "rb")
@@ -140,7 +140,6 @@ def main():
 
   return 0
 
-
 def quikr_call(fasta_file):
   input_location = input_directory + fasta_file
   output_location = output_directory + os.path.basename(fasta_file)
-- 
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