From 36def8a7a0fafc1b16a3c70cecbb7c4a47f2938d Mon Sep 17 00:00:00 2001
From: Calvin Morrison <mutantturkey@gmail.com>
Date: Thu, 31 Oct 2013 15:55:58 -0400
Subject: remove all references to sensing-fasta

---
 src/c/quikr.1 | 7 +------
 1 file changed, 1 insertion(+), 6 deletions(-)

(limited to 'src/c/quikr.1')

diff --git a/src/c/quikr.1 b/src/c/quikr.1
index 89969a6..4418a7f 100644
--- a/src/c/quikr.1
+++ b/src/c/quikr.1
@@ -5,8 +5,6 @@ quikr \- Calculate estimated frequencies of bacteria in a sample.
 .B quikr
 .RB [ \-i
 .IR input]
-.RB [ \-f
-.IR sensing-fasta]
 .RB [ \-s
 .IR sensing-matrix]
 .RB [ \-l
@@ -29,9 +27,6 @@ input FASTA file and a trained sensing matrix
 .B \-i, --input
 the sample's fasta file of NGS. READS (fasta format)
 .TP
-.B \-f, --sensing-fasta
-location of the fasta file database used to create the sensing matrix. (fasta format)
-.TP
 .B \-s, --sensing-matrix
 location of the sensing matrix. (trained from quikr_train)
 .TP
@@ -52,7 +47,7 @@ print version.
 .SH EXAMPLES
 Use quikr to calculate the estimated frequencies for sample.fa, using rdp7.fasta as the sensing matrix we generated with quikr_train. This uses 6-mers by default, and a lambda value of 10000:
 .P
-quikr -i sample.fa -f rdp7.fa -s rdp_sensing_matrix.gz -o frequencies.txt
+quikr -i sample.fa -s rdp_sensing_matrix.gz -o frequencies.txt
 .SH "SEE ALSO"
 \fBmultifasta_to_otu\fP(1), \fBquikr_train\fP(1).
 .SH AUTHORS
-- 
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