From 592e0945fcfb94d641c16f2cf02add0c0430b226 Mon Sep 17 00:00:00 2001
From: Calvin Morrison <mutantturkey@gmail.com>
Date: Tue, 4 Mar 2014 14:19:46 -0500
Subject: fix all warnings and that weird bug

---
 src/c/kmer_utils.c | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'src/c/kmer_utils.c')

diff --git a/src/c/kmer_utils.c b/src/c/kmer_utils.c
index ca33156..0980a69 100644
--- a/src/c/kmer_utils.c
+++ b/src/c/kmer_utils.c
@@ -28,7 +28,7 @@ unsigned long num_to_index(const char *str, const int kmer, const long error_pos
 
   for(i = kmer - 1; i >= 0; i--){
 
-		if(str[i] >> 2) { 
+		if(str[i] == 5) { 
 			// position += i;
 			return error_pos;
 		}
@@ -117,7 +117,7 @@ unsigned long long * get_kmer_counts_from_file(const char *fn, const unsigned in
 
 		// strip out all other newlines to handle multiline sequences
 		str = strnstrip(start, str, '\n',start_len);
-		size_t seq_length = strlen(str);
+		ssize_t seq_length = strlen(str);
 		if(seq_length < kmer)
 			continue;
 
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