From bb810d85d92648d5cc812891dc8ca90b5fe4aa7a Mon Sep 17 00:00:00 2001 From: mutantturkey Date: Sat, 16 Mar 2013 15:28:32 -0400 Subject: use is_compressed --- src/python/quikr.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/src/python/quikr.py b/src/python/quikr.py index cb33493..a756e6c 100755 --- a/src/python/quikr.py +++ b/src/python/quikr.py @@ -23,10 +23,10 @@ def generate_kmers(kmer): return '\n'.join(''.join(x) for x in itertools.product('acgt', repeat=kmer)) -def isCompressed(filename): +def is_compressed(filename): """ This function checks to see if the file is gzipped - >>> boolean_value = isCompressed("/path/to/compressed/gzip/file") + >>> boolean_value = is_compressed("/path/to/compressed/gzip/file") >>> print boolean_value True @@ -39,7 +39,7 @@ def isCompressed(filename): try: f = open(filename, "rb") except IOError: - print "Warning: isCompressed could not find " + filename + print "Warning: is_compressed could not find " + filename return False # The first two bytes of a gzipped file are always '1f 8b' @@ -71,7 +71,7 @@ def train_matrix(input_file_location, kmer): def load_trained_matrix_from_file(trained_matrix_location): """ This is a helper function to load our trained matrix and run quikr """ - if isCompressed(trained_matrix_location): + if is_compressed(trained_matrix_location): trained_matrix_file = gzip.open(trained_matrix_location, "rb") else: trained_matrix_file = open(trained_matrix_location, "rb") -- cgit v1.2.3