From 92998412716a7ae7559a6b5a0a04cfab2b10a83e Mon Sep 17 00:00:00 2001
From: Calvin Morrison <mutantturkey@gmail.com>
Date: Tue, 29 Oct 2013 15:32:12 -0400
Subject: append variables in makefile to reduce redundancy

---
 src/c/Makefile | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/src/c/Makefile b/src/c/Makefile
index 0e03ad8..1d3581d 100644
--- a/src/c/Makefile
+++ b/src/c/Makefile
@@ -3,12 +3,14 @@ UNAME := $(shell uname)
 CC = gcc
 QUIKR_TRAIN_CFLAGS = -D$(UNAME) -DVERSION=$(VERSION)
 MULTIFASTA_CFLAGS = -pthread -L../ -I../ -std=gnu99 -fopenmp -D$(UNAME) -DVERSION=$(VERSION)
-QUIKR_CFLAGS = -std=gnu99 -D$(UNAME) -DVERSION=$(VERSION)
+QUIKR_CFLAGS = -D$(UNAME) -DVERSION=$(VERSION)
+CFLAGS = -Wall -Wextra -lm -lz 
+
 
 ifndef DEBUG
-CFLAGS = -O3 -s -mtune=native -Wextra -Wall -lm -lz
+CFLAGS += -O3 -s -mtune=native 
 else 
-CFLAGS = -ggdb3 -O0 -Wall -Wextra -lm -lz
+CFLAGS += -ggdb3 -O0 
 endif
 
 all: nnls.o kmer_utils.o quikr_train quikr multifasta_to_otu
-- 
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