From 799f38571f8f74c92e91e4b383e75f1476267082 Mon Sep 17 00:00:00 2001 From: Calvin Date: Tue, 14 May 2013 14:26:50 -0400 Subject: remove probabilties by read --- doc/cli.markdown | 1 - doc/index.markdown | 3 ++- src/nbc/count | Bin 572503 -> 0 bytes src/nbc/probabilities-by-read | Bin 394061 -> 0 bytes 4 files changed, 2 insertions(+), 2 deletions(-) delete mode 100755 src/nbc/count delete mode 100755 src/nbc/probabilities-by-read diff --git a/doc/cli.markdown b/doc/cli.markdown index d4a1bb9..843bae9 100644 --- a/doc/cli.markdown +++ b/doc/cli.markdown @@ -73,7 +73,6 @@ multifasta\_to\_otu's arguments: OTU's) -t, --trained-matrix, the trained matrix -f, --trained-fasta, the fasta file database of sequences - -d, --output-directory, quikr output directory -l, --lamb, specify what size of lambda to use (the default value is 10,000) -k, --kmer, specify what size of kmer to use, (default value is 6) -j, --jobs, specifies how many jobs to run at once, (default=number of CPUs) diff --git a/doc/index.markdown b/doc/index.markdown index 738bc47..93688bc 100644 --- a/doc/index.markdown +++ b/doc/index.markdown @@ -1,7 +1,6 @@ # Quikr # This is the homepage for quikr. - ## What is Quikr ## Quikr is a QUadratic, Iterative, K-mer based Reconstruction technique that utilizes sparsity promoting ideas from the field of compressed sensing to @@ -23,6 +22,8 @@ scripts, and matlab scripts. + [Python documentation](python.html) + [Command Line Utilities](cli.html) +## Contact ## +For issues with the python implementation, contact gailro@gmail.com ## Contributors ## + David Koslicki diff --git a/src/nbc/count b/src/nbc/count deleted file mode 100755 index 21b4e60..0000000 Binary files a/src/nbc/count and /dev/null differ diff --git a/src/nbc/probabilities-by-read b/src/nbc/probabilities-by-read deleted file mode 100755 index 08908cc..0000000 Binary files a/src/nbc/probabilities-by-read and /dev/null differ -- cgit v1.2.3