From 771d79d44806d74fddc212da997c69af6010cb6c Mon Sep 17 00:00:00 2001
From: mutantturkey <mutantturke@gmail.com>
Date: Tue, 26 Feb 2013 10:45:11 -0500
Subject: iteratively loop through

---
 multifasta_to_otu.py | 12 +++++++-----
 1 file changed, 7 insertions(+), 5 deletions(-)
 mode change 100644 => 100755 multifasta_to_otu.py

diff --git a/multifasta_to_otu.py b/multifasta_to_otu.py
old mode 100644
new mode 100755
index 34af060..18ddc35
--- a/multifasta_to_otu.py
+++ b/multifasta_to_otu.py
@@ -53,9 +53,11 @@ def main():
 
     if args.kmer is not None:
         kmer = args.kmer
-    fasta_list = os.listdir(args.
-    pool = Pool(processes=jobs)
-    result = pool.map(quikr_call, fasta_list)
+    fasta_list = os.listdir(args.input_directory)
+
+    for fasta in fasta_list:
+       quikr_call(fasta)
+
     return 0
 
 def quikr_call(fasta_file):
@@ -63,6 +65,6 @@ def quikr_call(fasta_file):
   np.savetxt(output_directory + os.path.basename(fasta_file), xstar, delimiter=",", fmt="%f")
   return 0
 
- if __name__ == "__main__":
-     sys.exit(main())
+if __name__ == "__main__":
+  sys.exit(main())
  
-- 
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