From 6b63b947d5a6092e856f47b1422151dbc251346e Mon Sep 17 00:00:00 2001
From: Calvin <calvin@EESI>
Date: Wed, 13 Mar 2013 13:17:59 -0400
Subject: updated makefile to install nbc properly and python properly.

---
 Makefile | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/Makefile b/Makefile
index e69de29..06a35ab 100644
--- a/Makefile
+++ b/Makefile
@@ -0,0 +1,29 @@
+all: nbc python
+
+install: 
+	@echo installing executable files to ${DESTDIR}${PREFIX}/bin
+	@mkdir -p ${DESTDIR}${PREFIX}/bin
+	@cp -vf src/nbc/probabilities-by-read ${DESTDIR}${PREFIX}/bin/probabilities-by-read
+	@cp -vf src/nbc/count ${DESTDIR}${PREFIX}/bin/count-kmers
+	@cp -vf src/python/quikr ${DESTDIR}${PREFIX}/bin/quikr
+	@cp -vf src/python/quikr_train ${DESTDIR}${PREFIX}/bin/quikr_train
+	@cp -vf src/python/multifasta_to_otu ${DESTDIR}${PREFIX}/bin/multifasta_to_otu
+	chmod -v 755 ${DESTDIR}${PREFIX}/bin/probabilities-by-read
+	chmod -v 755 ${DESTDIR}${PREFIX}/bin/count-kmers
+	chmod -v 755 ${DESTDIR}${PREFIX}/bin/quikr
+	chmod -v 755 ${DESTDIR}${PREFIX}/bin/quikr_train
+	chmod -v 755 ${DESTDIR}${PREFIX}/bin/multifasta_to_otu
+	@cd src/python; python setup.py install
+
+nbc:
+	@echo "building nbc"
+	@cd src/nbc; make
+
+python:
+	@echo "configuring python"
+	@cd src/python; python setup.py build
+
+clean:
+	@echo "cleaning up"
+	@cd src/python; rm build -Rvf
+	@cd src/nbc; make clean
-- 
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