From 0d5cf0808f5ea0053526f485c40d5c67238b818c Mon Sep 17 00:00:00 2001
From: Calvin Morrison <mutantturkey@gmail.com>
Date: Thu, 5 Sep 2013 14:53:39 -0400
Subject: bump to version v1.0.4

---
 CHANGELOG                 | 6 ++++++
 src/c/Makefile            | 2 +-
 src/c/multifasta_to_otu.1 | 2 +-
 src/c/quikr.1             | 2 +-
 src/c/quikr_train.1       | 2 +-
 5 files changed, 10 insertions(+), 4 deletions(-)

diff --git a/CHANGELOG b/CHANGELOG
index 3bdd3de..0557226 100644
--- a/CHANGELOG
+++ b/CHANGELOG
@@ -23,3 +23,9 @@ June 12th 2013, 1.0.3 Relased
 - implement --version and -V in quikr
 - fix input directory check in multifasta
 - matlab: don't depend on mer text files, instead use generate_kmers for kmers
+
+Sept 5th 2013, 1.0.4 Released
+- fix -h and --help options to parse correctly
+- remove the debugging option
+- update Makefile to ensure NBC and the C verison are build before installing
+- documentation updates
diff --git a/src/c/Makefile b/src/c/Makefile
index 35bc645..e927b13 100644
--- a/src/c/Makefile
+++ b/src/c/Makefile
@@ -1,4 +1,4 @@
-VERSION=\"v1.0.3\"
+VERSION=\"v1.0.4\"
 UNAME := $(shell uname)
 CC = gcc
 QUIKR_TRAIN_CFLAGS = -O3 -s -mtune=native -Wall -lm -lz -D$(UNAME) -DVERSION=$(VERSION)
diff --git a/src/c/multifasta_to_otu.1 b/src/c/multifasta_to_otu.1
index cb5181d..63e08b8 100644
--- a/src/c/multifasta_to_otu.1
+++ b/src/c/multifasta_to_otu.1
@@ -1,4 +1,4 @@
-.TH multifasta_to_otu 1 multifasta_to_otu-2013-05
+.TH multifasta_to_otu 1 multifasta_to_otu-2013-09
 .SH NAME
 multifasta_to_otu \- create a QIIME OTU table based on Quikr results.
 .SH SYNOPSIS
diff --git a/src/c/quikr.1 b/src/c/quikr.1
index ee0960e..89969a6 100644
--- a/src/c/quikr.1
+++ b/src/c/quikr.1
@@ -1,4 +1,4 @@
-.TH quikr 1 quikr-2013-05
+.TH quikr 1 quikr-2013-09
 .SH NAME
 quikr \- Calculate estimated frequencies of bacteria in a sample.
 .SH SYNOPSIS
diff --git a/src/c/quikr_train.1 b/src/c/quikr_train.1
index ba6d17f..69208b4 100644
--- a/src/c/quikr_train.1
+++ b/src/c/quikr_train.1
@@ -1,4 +1,4 @@
-.TH quikr_train 1 quikr_train-2013-05
+.TH quikr_train 1 quikr_train-2013-09
 .SH NAME
 quikr_train \- train databases for use with Quikr
 .SH SYNOPSIS
-- 
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