# dna-utils 


This repository contains general utilities for processing sequences in fasta files.


### Tools included ###


kmer_total_count - this program will count each kmer in a fasta file, and print to standard out.

#### Usage

    kmer_total_count filename kmer_size
    
    # Example
    calvin@barnabas:~/dna-utils$ ./kmer_total_count SuperManSequences.fasta 8 

the order of the array corresponds to AAAA, AAAC, AAAG, AAAT and so on