From 7ded6cee0153b51080375bf16001789dc392584d Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Mon, 3 Mar 2014 19:19:02 -0500 Subject: C++ version using unordered map --- kmer_total_count.c | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) (limited to 'kmer_total_count.c') diff --git a/kmer_total_count.c b/kmer_total_count.c index 12f9ab4..c55ffa5 100644 --- a/kmer_total_count.c +++ b/kmer_total_count.c @@ -6,7 +6,6 @@ #include #include -#include "sparse.h" #include "kmer_utils.h" @@ -117,12 +116,12 @@ int main(int argc, char **argv) { } if(kmer > 12 || force_sparse) { - node *root = get_sparse_kmer_counts_from_file(fh, kmer); - print_sparse(root, label, nonzero, kmer); + kmer_map *counts = get_sparse_kmer_counts_from_file(fh, kmer); + print_kmer(counts, label, nonzero, kmer); } else { unsigned long long *counts = get_dense_kmer_counts_from_file(fh, kmer); - print_dense(counts, label, nonzero, kmer); + print_kmer(counts, label, nonzero, kmer); } return EXIT_SUCCESS; -- cgit v1.2.3