From 6ea90212e404cf39debc14d82e02f6c284b05006 Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Sat, 1 Feb 2014 18:20:57 -0500 Subject: change headers, organize --- kmer_utils.h | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/kmer_utils.h b/kmer_utils.h index cfe664b..3caa8de 100644 --- a/kmer_utils.h +++ b/kmer_utils.h @@ -1,8 +1,7 @@ // Kmer functions void convert_kmer_to_num(char *str, const unsigned long length); -unsigned long num_to_index(const char *str, const int kmer, const long error_pos, size_t *current_position); +unsigned long num_to_index(const char *str, const int kmer, const long error_pos, long long *current_position); char *index_to_kmer(unsigned long long index, long kmer); -unsigned long long * get_kmer_counts_from_file(const char *fn, const int kmer); // Utility functions char *strnstrip(const char *s, char *dest, int c, int len); @@ -11,4 +10,6 @@ unsigned long long pow_four(unsigned long long x); // Variables const unsigned char alpha[256]; -unsigned long long load_specific_mers_from_file(char *fn, unsigned int kmer, size_t width, size_t *arr); +// file loading functions +unsigned long long load_specific_mers_from_file(const char *fn, unsigned int kmer, size_t width, size_t *arr); +unsigned long long * get_kmer_counts_from_file(FILE *fh, const int kmer); -- cgit v1.2.1