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path: root/kmer_continuous_count.c
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2014-03-06update readme, add a check_null_ptr function to clear up clutterCalvin Morrison
2014-03-06add kmer_continuous_countCalvin Morrison
this tool will count continuously, instead of line by line. The way that this works out is something like this: test.fa > header 1 AAAAATTTTT > header 2 GGGGGAAAAA counting 6 mers, the program will count TTTGGG, TTGGGG, TGGGGG, like there was no header seperating them. This can be useful for certain tyeps of processing, like when the sequences are continuous from a genome. initial commit