Tools for parsing FASTA files very fast http://git.ceux.org/dna-utils.git/atom?h=v0.0.4 2014-03-12T20:08:02+00:00 2014-03-12T20:08:02+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-12T20:08:02+00:00 urn:sha1:48ab93409cbf2e0a06a0632291db0aed2aa93c9e 2014-03-06T23:11:29+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-06T23:11:29+00:00 urn:sha1:2c4a47beec423a6d27cfc27f084380a1cf3fb4ae 2014-03-06T22:05:40+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-06T22:05:40+00:00 urn:sha1:2c038ba630c14c7030186c64e9eb92761ddcba74 this tool will count continuously, instead of line by line. The way that this works out is something like this: test.fa > header 1 AAAAATTTTT > header 2 GGGGGAAAAA counting 6 mers, the program will count TTTGGG, TTGGGG, TGGGGG, like there was no header seperating them. This can be useful for certain tyeps of processing, like when the sequences are continuous from a genome. initial commit 2014-02-02T05:40:13+00:00 Calvin Morrison mutantturkey@gmail.com 2014-02-02T05:40:13+00:00 urn:sha1:9e8c8b136fbee0c55c5a428f58fad4ffa2a19702 2014-02-01T23:14:44+00:00 Calvin Morrison mutantturkey@gmail.com 2014-02-01T23:14:44+00:00 urn:sha1:ad7d574b02c4f9aa5967b11eadeb0ec9dda1c06d 2014-02-01T19:12:06+00:00 Calvin Morrison mutantturkey@gmail.com 2014-02-01T19:12:06+00:00 urn:sha1:d30e7317cbb5ca4222578e11e465290489b99b08 2013-11-07T22:25:44+00:00 Calvin Morrison mutantturkey@gmail.com 2013-11-07T22:25:44+00:00 urn:sha1:d2db15836b836696dfff747a54d0b442e368b5b4 2013-11-07T22:25:06+00:00 Calvin Morrison mutantturkey@gmail.com 2013-11-07T22:25:06+00:00 urn:sha1:b508436d6982205508d531ba19c9980570946ae7 2013-10-17T17:30:03+00:00 Calvin Morrison mutantturkey@gmail.com 2013-10-17T17:30:03+00:00 urn:sha1:801b5931b82a111955a9c607d43aeaa8f42afae8 2013-10-17T14:50:15+00:00 Calvin Morrison mutantturkey@gmail.com 2013-10-17T14:50:15+00:00 urn:sha1:c08ffceaaccd3d1140443fd29f81f8dc9c24ca3a