dna-utils.git/Makefile, branch master Tools for parsing FASTA files very fast http://git.ceux.org/dna-utils.git/atom?h=master 2014-04-14T17:15:47+00:00 merge 2014-04-14T17:15:47+00:00 Calvin Morrison mutantturkey@gmail.com 2014-04-14T17:15:47+00:00 urn:sha1:75b61da3ab27712bd96690b1e52a4c3c12788d49 update makefile to remove all properly 2014-04-14T16:24:32+00:00 Calvin Morrison mutantturkey@gmail.com 2014-04-14T16:24:32+00:00 urn:sha1:0a1c943dc2ab12b5c60befa6035483227dced159 add dependencey in makefile 2014-04-11T22:03:59+00:00 Calvin Morrison mutantturkey@gmail.com 2014-04-11T22:03:59+00:00 urn:sha1:469e61865adb5ad1580dfde08033b963d138f7bf Merge branch 'master' of github.com:mutantturkey/dna-utils 2014-04-11T14:10:38+00:00 Calvin Morrison mutantturkey@gmail.com 2014-04-11T14:10:38+00:00 urn:sha1:564bdd120fa4e2de4c8419d774f1fa6e1d8a0fbc tune to specific processor, speed boost 2014-04-11T14:10:22+00:00 Calvin Morrison mutantturkey@gmail.com 2014-04-11T14:10:22+00:00 urn:sha1:2319585caf71cded277d045c9d4001566d753778 use object for utils 2014-04-10T19:38:38+00:00 Calvin Morrison mutantturkey@gmail.com 2014-04-10T19:38:38+00:00 urn:sha1:bfab0cc8ed7887206457b01285e6d014f2fcfa2c MERGE sparse trunk into master 2014-04-09T21:12:09+00:00 Calvin Morrison mutantturkey@gmail.com 2014-04-09T21:12:09+00:00 urn:sha1:d8578f338104287b4af59cbadb01f0e45843962d bump version 2014-03-12T20:08:02+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-12T20:08:02+00:00 urn:sha1:48ab93409cbf2e0a06a0632291db0aed2aa93c9e add continuous to install path 2014-03-06T23:11:29+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-06T23:11:29+00:00 urn:sha1:2c4a47beec423a6d27cfc27f084380a1cf3fb4ae add kmer_continuous_count 2014-03-06T22:05:40+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-06T22:05:40+00:00 urn:sha1:2c038ba630c14c7030186c64e9eb92761ddcba74 this tool will count continuously, instead of line by line. The way that this works out is something like this: test.fa > header 1 AAAAATTTTT > header 2 GGGGGAAAAA counting 6 mers, the program will count TTTGGG, TTGGGG, TGGGGG, like there was no header seperating them. This can be useful for certain tyeps of processing, like when the sequences are continuous from a genome. initial commit