Tools for parsing FASTA files very fast http://git.ceux.org/dna-utils.git/atom?h=v0.0.4 2014-03-12T20:10:55+00:00 2014-03-12T20:10:55+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-12T20:10:55+00:00 urn:sha1:b7c04f4067e3eb51d8542438c4bda6e1a663fff9 2014-03-12T20:08:02+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-12T20:08:02+00:00 urn:sha1:48ab93409cbf2e0a06a0632291db0aed2aa93c9e 2014-03-12T20:07:12+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-12T20:07:12+00:00 urn:sha1:ef4781ff21882cc589c95456a24cafca9f0c2475 2014-03-12T20:06:46+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-12T20:06:46+00:00 urn:sha1:35135e92af473c3641d1be0a53c761fc084861c3 2014-03-12T20:06:25+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-12T20:06:25+00:00 urn:sha1:fdc2ab95726b27ffabf70a73c00c266aa2717873 2014-03-06T23:11:29+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-06T23:11:29+00:00 urn:sha1:2c4a47beec423a6d27cfc27f084380a1cf3fb4ae 2014-03-06T22:58:35+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-06T22:58:35+00:00 urn:sha1:435e6218e8d4faa118cabccdacfeddb589b835ee 2014-03-06T22:58:19+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-06T22:58:19+00:00 urn:sha1:c052ff4d47ea37655670d9d0ab9754ec746c2d7c 2014-03-06T22:05:40+00:00 Calvin Morrison mutantturkey@gmail.com 2014-03-06T22:05:40+00:00 urn:sha1:2c038ba630c14c7030186c64e9eb92761ddcba74 this tool will count continuously, instead of line by line. The way that this works out is something like this: test.fa > header 1 AAAAATTTTT > header 2 GGGGGAAAAA counting 6 mers, the program will count TTTGGG, TTGGGG, TGGGGG, like there was no header seperating them. This can be useful for certain tyeps of processing, like when the sequences are continuous from a genome. initial commit 2014-02-27T19:06:02+00:00 Calvin Morrison mutantturkey@gmail.com 2014-02-27T19:06:02+00:00 urn:sha1:5d7e67a846ec104da2d7bdb988672fbd02ddda28