dna-utils.git, branch refactor-total-count Tools for parsing FASTA files very fast http://git.ceux.org/dna-utils.git/atom?h=refactor-total-count 2014-01-17T21:18:19+00:00 add test.fa 2014-01-17T21:18:19+00:00 Calvin Morrison mutantturkey@gmail.com 2014-01-17T21:18:19+00:00 urn:sha1:78b0a8db8d41d9748ea8cba41120821bf3876b9c add in pointer fix 2014-01-17T21:13:49+00:00 Calvin Morrison mutantturkey@gmail.com 2014-01-17T21:13:49+00:00 urn:sha1:97febe91b23883f058df0c9bf99730ced8ce94ea fix pointer 2014-01-17T20:47:59+00:00 Calvin Morrison mutantturkey@gmail.com 2014-01-17T20:47:59+00:00 urn:sha1:468f3d2c268ebee5bade389aebe368d2134e937b update translate function 2014-01-16T18:11:06+00:00 Calvin Morrison mutantturkey@gmail.com 2014-01-16T18:11:06+00:00 urn:sha1:c34cb2424726b7c3643d65ad048144dfef585e3c add a fread_save_n_bytes function 2014-01-16T15:26:33+00:00 Calvin Morrison mutantturkey@gmail.com 2014-01-16T15:26:33+00:00 urn:sha1:851ad0f28451f631aad9f9109295637238d3fc26 fix spacing 2014-01-15T19:56:26+00:00 Calvin Morrison mutantturkey@gmail.com 2014-01-15T19:56:26+00:00 urn:sha1:9ac5b771c630f2f3259130145db3db5876b8c8e1 start using fread, still not working 2014-01-15T19:55:01+00:00 Calvin Morrison mutantturkey@gmail.com 2014-01-15T19:55:01+00:00 urn:sha1:c2e001065a979ea14f78d46593168c3e7075bbc4 add handling for overrunning the string length, and if there's a skip char in the first position, also more smartly write (unsigned long long), and clean up our multiplier value 2014-01-15T17:58:36+00:00 Calvin Morrison mutantturkey@gmail.com 2014-01-15T17:58:36+00:00 urn:sha1:489d59d65f95de343ddf56d3725feb06f8b5be13 add a fix for skip char 2014-01-15T17:08:51+00:00 Calvin Morrison mutantturkey@gmail.com 2014-01-15T17:08:51+00:00 urn:sha1:67bf470e1246db3fa15c56315aa0038f393a5b07 fix counting to not be reversed, remove is_whitespace is_error_char and instead add values to lookup array, make lookup function more general for later use 2014-01-15T16:54:33+00:00 Calvin Morrison mutantturkey@gmail.com 2014-01-15T16:54:33+00:00 urn:sha1:d9757890cae093ccd805bd773f8c4759165907bf