From 5a5d89d3881cb0d9014168845d96e5eebeb2bd42 Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Mon, 31 Mar 2014 13:27:06 -0400 Subject: Add feature to have a top-scores file. closes issue #21 --- src/score_mers.py | 6 +----- 1 file changed, 1 insertion(+), 5 deletions(-) (limited to 'src') diff --git a/src/score_mers.py b/src/score_mers.py index e3d2c58..13050e7 100755 --- a/src/score_mers.py +++ b/src/score_mers.py @@ -169,7 +169,6 @@ def load_heterodimer_dic(selected_mers): def check_feasible(selected): total = 0 for mer in selected: - print mer, len(fg_mers[mer]), len(selected) total += len(fg_mers[mer]) if (fg_genome_length / (total + 1 )) > max_mer_distance: print "even if we select all top ", max_select, @@ -444,7 +443,6 @@ def main(): fg_mers[mer] = [] bg_mers[mer] = [] - print fg_mers.keys() print "calculating heterodimer distances" load_heterodimer_dic(fg_mers.keys()) @@ -454,14 +452,12 @@ def main(): print "Populating background locations" populate_locations(fg_mers.keys(), bg_mers, args.background) - print fg_mers - for mer in bg_mers: bg_mers[mer] = len(bg_mers[mer]) score_all_combinations(fg_mers.keys()) - print "output_file:", output_file + print "output file:", output_file if __name__ == "__main__": sys.exit(main()) -- cgit v1.2.1