From f363df2ac34c34b1c2f223bb5a81c456a764ac38 Mon Sep 17 00:00:00 2001
From: Calvin Morrison <mutantturkey@gmail.com>
Date: Fri, 21 Mar 2014 13:42:54 -0400
Subject: add end of sequences in as points in our array

---
 src/sequence_length.c | 55 ---------------------------------------------------
 1 file changed, 55 deletions(-)
 delete mode 100644 src/sequence_length.c

(limited to 'src/sequence_length.c')

diff --git a/src/sequence_length.c b/src/sequence_length.c
deleted file mode 100644
index 3df7175..0000000
--- a/src/sequence_length.c
+++ /dev/null
@@ -1,55 +0,0 @@
-// Copyright 2013 Calvin Morrison
-#include <stdio.h>
-#include <stdlib.h>
-#include <unistd.h>
-#include <stdint.h>
-#include <stdbool.h>
-#include <errno.h>
-int main() {
-
-	size_t len = 0;
-
-	char buffer[4096];
-	bool header = false;
-
-	len = fread(&buffer, 1, 1, stdin);
-
-	unsigned long long seq_length = 0;
-	if(!errno) {
-		if(buffer[0] == '>') {
-			header = true;
-
-			while((len = fread(&buffer, 1, 4096, stdin)) != 0) {
-				size_t i = 0;                                                                    
-				for(i = 0; i < len; i++) {
-					if(buffer[i] == '>') {
-						printf("%llu\n", seq_length);
-						seq_length = 0;
-						header = true;
-						continue;
-					}   
-					else if(buffer[i] == '\n' && header == true) {
-						header = false;
-						continue;
-					}
-					if(header == false && buffer[i] != '\n') { 
-						seq_length++;
-					}   
-				}   
-			}   
-		} 
-		else { 
-			fprintf(stderr, "this does not look like a fasta file\n"); 
-			return EXIT_FAILURE;
-		}
-	} 
-	else { 
-		fprintf(stderr, "could not read file\n"); 
-		return EXIT_FAILURE;
-	}
-
-	printf("%llu\n", seq_length);
-
-	return EXIT_SUCCESS;
-}
-
-- 
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