From 7ae2dee4d9445f02535d8fd479ddaacb2f968b86 Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Wed, 16 Jul 2014 13:31:53 -0400 Subject: work on filters --- src/remove_mers.py | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 src/remove_mers.py (limited to 'src/remove_mers.py') diff --git a/src/remove_mers.py b/src/remove_mers.py new file mode 100644 index 0000000..b18992a --- /dev/null +++ b/src/remove_mers.py @@ -0,0 +1,17 @@ +#!/usr/bin/env python2.7 +import sys + +if __name__ == "__main__": + + if len(sys.argv) is 1: + exit("Filter mers, input is stdin, output is stdout, mers are argv") + + mers_to_delete = set() + + for mer in sys.argv[1:]: + mers_to_delete.add(mer) + + for line in sys.stdin: + if line.split()[0] not in mers_to_delete: + sys.stdout.write(line) + -- cgit v1.2.3