From 85ba6e83f0f7cb0856b3667b10655ad2d0b90761 Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Tue, 8 Apr 2014 12:19:27 -0400 Subject: update arg info --- src/output_full_genome.py | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) (limited to 'src/output_full_genome.py') diff --git a/src/output_full_genome.py b/src/output_full_genome.py index 81b55e3..e55136a 100755 --- a/src/output_full_genome.py +++ b/src/output_full_genome.py @@ -113,11 +113,13 @@ def populate_locations(selected_mers, mer_dic, input_fn, length): def main(): - parser = argparse.ArgumentParser(description="score mers") + parser = argparse.ArgumentParser(description="take a top-scores file, and \ + create a set of files that contain the positions (and other information) in \ + the foreground fasta file of each mer in that combination. ") parser.add_argument("-f", "--fasta", help="input fasta file", required=True) - parser.add_argument("-s", "--scores", help="scores file", required=True) - parser.add_argument("-o", "--output_directory", help="scores file", required=True) - parser.add_argument("-n", "--number", help="output top n", required=False, type=int, default=20) + parser.add_argument("-s", "--scores", help="input scores file", required=True) + parser.add_argument("-o", "--output_directory", help="directory to output sets to.", required=True) + parser.add_argument("-n", "--number", help="output the first n sets", required=False, type=int, default=20) args = parser.parse_args() -- cgit v1.2.3