From 927b681691b293afbb798a65d4340446e7f6fb6c Mon Sep 17 00:00:00 2001
From: Calvin Morrison <mutantturkey@gmail.com>
Date: Tue, 8 Apr 2014 12:30:43 -0400
Subject: add lock

---
 SelectiveWholeGenomeAmplification | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'SelectiveWholeGenomeAmplification')

diff --git a/SelectiveWholeGenomeAmplification b/SelectiveWholeGenomeAmplification
index e778cbd..f6269d5 100755
--- a/SelectiveWholeGenomeAmplification
+++ b/SelectiveWholeGenomeAmplification
@@ -27,6 +27,7 @@ check_mers() {
 	fi
 
 	# check each mer size and process if not already run
+	lock $tmp_directory/counts-lock
 	for (( mer = min_mer_range; mer <= max_mer_range; mer++)) ; do 
 		if [[ ! -e "$counts"-counts-"$mer" ]]; then
 			echo "    checking $mer mers for $fasta_file"
@@ -39,7 +40,7 @@ check_mers() {
 		cat "$counts"-counts-"$mer" >> "$counts"-counts
 
 	done
-
+	rmdir $tmp_directory/counts-lock
 }
 
 all=run
-- 
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