From ecb8a85eb5cf25e0aba4a3d2d7abf94f63f17297 Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Mon, 3 Mar 2014 14:59:42 -0500 Subject: update defaults and align variable names with global env variables --- SelectiveGenomeAmplificationUI | 15 ++++++++++++++- 1 file changed, 14 insertions(+), 1 deletion(-) (limited to 'SelectiveGenomeAmplificationUI') diff --git a/SelectiveGenomeAmplificationUI b/SelectiveGenomeAmplificationUI index d6a6bb5..b6a2fa6 100755 --- a/SelectiveGenomeAmplificationUI +++ b/SelectiveGenomeAmplificationUI @@ -10,30 +10,43 @@ questions = [ { 'question' : "Where would you like your output directory to be?", 'default_str': 'current directory/foreground_background/', 'variable': 'output_directory' }, + {'question': "Where would you like to temporary files to be stored?", 'default_str': '$output_directory/.tmp', 'variable': "temp_directory" }, + {'question': "Where would you like to count files to be stored?", 'default_str': '$output_directory/.tmp', 'variable': "counts_directory" }, + { 'question': 'maximum mer size you would like to pick?', 'default_str': '12', 'variable': 'max_mer_range' }, + { 'question': 'minimum mer size you would like to pick?', 'default_str': '6', 'variable': 'min_mer_range' }, + { 'question': 'minimum mer count you want to have for your selected mer?', 'default_str': 'None', 'variable': 'min_mer_count' }, - { 'question': 'maximum number of mers you want to search and select?', + + { 'question': 'maximum size of mer combinations you want to search and select?', 'default_str': '15', 'variable': 'max_select' }, + + { 'question': 'maximum number of mers you want to use as possible primers?', + 'default_str': '35', + 'variable': 'max_check' }, + {'question': 'Enter mers to ignore? (space seperated)', 'default_str': "None", 'variable': 'ignore_mers'}, + { 'question': 'maximum distance between mers in the final selection?', 'default_str': "5000 bases", 'variable': 'max_mer_distance' }, + { 'question': 'maximum melting temperature for mers?', 'default_str': '30c', 'variable': 'max_melting_temp' }, { 'question': 'minimum melting temperature for mers?', 'default_str': '0c', 'variable': 'min_melting_temp' }, { 'question': 'maximum number of consecutively binding mers in hetero and homodimers?', 'default_str': '4', 'variable': 'max_consecutive_binding' } -- cgit v1.2.3