From a17c7fdf6e74652ab05eaa00203b40ad7a41e549 Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Thu, 27 Mar 2014 22:08:35 -0400 Subject: Add support for ignoring all mers. and more - add a check for filters. quit if no mers make it - add a final fg mer selection file in the $current_run folder - add a filter/ folder as not to clutter the current run - fix double quote syntax - add option for ignore all for the UI --- SelectiveGenomeAmplificationUI | 4 ++++ 1 file changed, 4 insertions(+) (limited to 'SelectiveGenomeAmplificationUI') diff --git a/SelectiveGenomeAmplificationUI b/SelectiveGenomeAmplificationUI index 810d0ca..edd56c8 100755 --- a/SelectiveGenomeAmplificationUI +++ b/SelectiveGenomeAmplificationUI @@ -43,6 +43,10 @@ questions = [ 'default_str': "None", 'variable': 'ignore_mers'}, + {'question': 'Enter files to ignore all mers from? (space seperated)', + 'default_str': "None", + 'variable': 'ignore_all_mers_from_files'}, + { 'question': 'maximum distance between mers in the final selection?', 'default_str': "5000 bases", 'variable': 'max_mer_distance' }, -- cgit v1.2.3