From 38bb1f3a1303e2f73ff1c939bf63b5108182b440 Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Mon, 31 Mar 2014 16:31:15 -0400 Subject: add UI for scorign func, update doc and varaibles --- SelectiveGenomeAmplificationUI | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) (limited to 'SelectiveGenomeAmplificationUI') diff --git a/SelectiveGenomeAmplificationUI b/SelectiveGenomeAmplificationUI index 297471b..4455a02 100755 --- a/SelectiveGenomeAmplificationUI +++ b/SelectiveGenomeAmplificationUI @@ -56,7 +56,8 @@ questions = [ { 'question': 'maximum number of consecutively binding mers in hetero and homodimers?', 'default_str': '4', 'variable': 'max_consecutive_binding' }, { 'question': 'what extra weight do you want for highgly binding primers? (0-1)', 'default_str': '0', 'variable': 'fg_weight' }, { 'question': 'what extra weight do you want for sets with a higher number of primers? (0-1)', 'default_str': '0', 'variable': 'primer_weight'}, - { 'question': 'How many scored sets would you like in the top_scored_sets output file?', 'default_str':'10000', 'variable': 'output_top_nb'} + { 'question': 'how many scored sets would you like in the top_scored_sets output file?', 'default_str':'10000', 'variable': 'output_top_nb'}, + { 'question': 'would you like to use a custom scoring function? see README.md for details', 'default_str':'', 'variable': 'score_func'} ] def bool_ask(ask_string, default): -- cgit v1.2.3