From f162d3b707ee1ad2111fe7523bf9d426af3636cb Mon Sep 17 00:00:00 2001
From: Calvin Morrison <mutantturkey@gmail.com>
Date: Thu, 23 Jan 2014 12:58:13 -0500
Subject: update min mer, add fg and bg to parameters

---
 SelectiveGenomeAmplification | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'SelectiveGenomeAmplification')

diff --git a/SelectiveGenomeAmplification b/SelectiveGenomeAmplification
index d5e1780..543f90b 100755
--- a/SelectiveGenomeAmplification
+++ b/SelectiveGenomeAmplification
@@ -34,7 +34,7 @@ fi
 : ${max_mer_distance=5000}
 # min/maximum kmer meling point
 : ${max_melting_temp=30}
-: ${min_melting_temp=0}
+: ${min_melting_temp=18}
 # minimum mer count
 : ${min_mer_count=0}
 # maximum mers to pick
@@ -120,7 +120,7 @@ if [ "$ignore_mers" ]; then
 fi
 
 echo "outputing current run parameters"
-for var in ignore_mers min_mer_range max_mer_range max_select min_mer_count max_mer_distance max_melting_temp min_melting_temp; do
+for var in ignore_mers min_mer_range max_mer_range max_select min_mer_count max_mer_distance max_melting_temp min_melting_temp foreground background; do 
  echo $var "${!var}" >> $output_directory/$current_run/parameters
 done;
 
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