From a239c75b35dd3e2f5af6e69092eac63bdf0f24f8 Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Wed, 22 Jan 2014 17:18:59 -0500 Subject: output parameters --- SelectiveGenomeAmplification | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) (limited to 'SelectiveGenomeAmplification') diff --git a/SelectiveGenomeAmplification b/SelectiveGenomeAmplification index 9358e39..d5e1780 100755 --- a/SelectiveGenomeAmplification +++ b/SelectiveGenomeAmplification @@ -102,7 +102,6 @@ for fasta_file in $foreground $background; do done done - fg_counts=$counts_directory/$(basename $foreground)-counts bg_counts=$counts_directory/$(basename $background)-counts @@ -120,6 +119,10 @@ if [ "$ignore_mers" ]; then done fi +echo "outputing current run parameters" +for var in ignore_mers min_mer_range max_mer_range max_select min_mer_count max_mer_distance max_melting_temp min_melting_temp; do + echo $var "${!var}" >> $output_directory/$current_run/parameters +done; echo "checking if mers are below melting temperature in the foreground" rm $fg_counts-non-melting -- cgit v1.2.3