From 7d87aed3cce0b0b498b3fb23e65037c3b5c24e8d Mon Sep 17 00:00:00 2001
From: Calvin Morrison <mutantturkey@gmail.com>
Date: Mon, 31 Mar 2014 13:38:14 -0400
Subject: fix sort

---
 SelectiveGenomeAmplification | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'SelectiveGenomeAmplification')

diff --git a/SelectiveGenomeAmplification b/SelectiveGenomeAmplification
index 9793293..4b3c8dc 100755
--- a/SelectiveGenomeAmplification
+++ b/SelectiveGenomeAmplification
@@ -324,7 +324,7 @@ if [[ -n "$step_score" ]] || [[ -n "$all" ]]; then
 	echo "sorting and outputting top $output_top_nb scores"
 	echo "top scores output file: $output_directory/$current_run/top-scores"
 	head -n 1 $output_directory/$current_run/all-scores > $output_directory/$current_run/top-scores
-	tail -n +2 $output_directory/$current_run/all-scores | sort -r $output_directory/$current_run/all-scores -t $'\t' -nk 3 | head -n $output_top_nb >> $output_directory/$current_run/top-scores
+	tail -n +2 $output_directory/$current_run/all-scores | sort -r -t $'\t' -nk 3 | head -n $output_top_nb >> $output_directory/$current_run/top-scores
 fi
 
 
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