From a75e7132eadc5f6525d3ef258b6f7bbb10846de9 Mon Sep 17 00:00:00 2001
From: Calvin Morrison <mutantturkey@gmail.com>
Date: Fri, 18 Apr 2014 16:52:46 -0400
Subject: force 2.7

---
 SelectiveWholeGenomeAmplificationUI   | 2 +-
 src/filter_average_binding.py         | 2 +-
 src/filter_max_consecutive_binding.py | 2 +-
 src/filter_max_timer.py               | 9 +++++++++
 src/filter_melting_temperature.py     | 2 +-
 src/output_full_genome.py             | 2 +-
 src/score_mers.py                     | 3 +--
 src/select_mers.py                    | 2 +-
 8 files changed, 16 insertions(+), 8 deletions(-)
 create mode 100644 src/filter_max_timer.py

diff --git a/SelectiveWholeGenomeAmplificationUI b/SelectiveWholeGenomeAmplificationUI
index c969d63..4b03465 100755
--- a/SelectiveWholeGenomeAmplificationUI
+++ b/SelectiveWholeGenomeAmplificationUI
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python2.7
 import os.path
 
 foreground = ""
diff --git a/src/filter_average_binding.py b/src/filter_average_binding.py
index d250c98..e526be8 100755
--- a/src/filter_average_binding.py
+++ b/src/filter_average_binding.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python2.7
 import sys
 import os
 
diff --git a/src/filter_max_consecutive_binding.py b/src/filter_max_consecutive_binding.py
index ad798e2..09d5728 100755
--- a/src/filter_max_consecutive_binding.py
+++ b/src/filter_max_consecutive_binding.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python2.7
 import sys, os
 
 binding = { 'A': 'T', 'T': 'A',	'C': 'G', 'G': 'C',	'_': False }
diff --git a/src/filter_max_timer.py b/src/filter_max_timer.py
new file mode 100644
index 0000000..687fa1e
--- /dev/null
+++ b/src/filter_max_timer.py
@@ -0,0 +1,9 @@
+import time
+import filter_max_consecutive_binding as fmax
+
+fmax.test()
+
+t = time.time()
+for i in range(100000):
+		fmax.max_consecutive_binding('ACCATATCA', 'TACATATA')
+print time.time() - t
diff --git a/src/filter_melting_temperature.py b/src/filter_melting_temperature.py
index b452b92..b2f18ff 100644
--- a/src/filter_melting_temperature.py
+++ b/src/filter_melting_temperature.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python2.7
 import argparse
 import sys
 import math
diff --git a/src/output_full_genome.py b/src/output_full_genome.py
index 5a0e3d5..6dc938f 100755
--- a/src/output_full_genome.py
+++ b/src/output_full_genome.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python2.7
 import sys
 import os
 import argparse
diff --git a/src/score_mers.py b/src/score_mers.py
index 7538ed4..43037e4 100755
--- a/src/score_mers.py
+++ b/src/score_mers.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python2.7
 import sys
 import os
 
@@ -99,7 +99,6 @@ def populate_locations(mers, mer_dic, input_fn, length):
 		_, merlist_fn = tempfile.mkstemp()
 		merlist_fh = open(merlist_fn, 'w')
 		for mer in n_mers:
-			print mer
 			merlist_fh.write(mer + '\n')
 
 		merlist_fh.flush()
diff --git a/src/select_mers.py b/src/select_mers.py
index f8f7f1a..b3cc09e 100755
--- a/src/select_mers.py
+++ b/src/select_mers.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python2.7
 import sys
 import os
 
-- 
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